This tutorial aims at introducing students to the use of command line terminal which offers more flexibility than built-in graphical user interfaces. We hope to provide students with an understanding of the basic command lines and advantages of working with the bash shell.
The objectives of this module are to: 1) Understand the basis of the signal used in functional magnetic resonance imaging. 2) Know the main steps of preprocessing fMRI data. 3) Know how functional connectivity is calculated, and how it is most commonly used. 4) Know the main brain parcellations and associated technical challenges .